miRBase entry: ssp-MIR169

Stem-loop ssp-MIR169


Accession
MI0018180
Description
Saccharum sp. ssp-MIR169 precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention ssp-MIR169
(3 sentences)

Sequence

gUAGCCAAGGAUGACUUGCCGGccgaugcuucgauggaucccucauccccguccggccgggaacgucgcacguauguauguaugcgugcauaugcugcgaacugugaggcauccauaucgaccggcagguucuucucuuuggcuac
(((((((((((.((((((((((.((((......((((((.((((((.((((......))))....(((((((((((((((....)))))))))).)))))...)))))).)))))))))).))))))))))....)))))))))))

Structure
           ---U          c    gcuucg      c      ccccguccggccgggaacg     -          u 
gUAGCCAAGGA    GACUUGCCGG cgau      auggau ccucau                   ucgca cguauguaug a
|||||||||||    |||||||||| ||||      |||||| ||||||                   ||||| ||||||||||  
caucgguuucu    uuggacggcc gcua      uaccua ggagug                   agcgu guauacgugc u
           cuuc          a    ------      c      ----------------uca     c          g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssp-miR169

Accession MIMAT0020278
Description Saccharum sp. ssp-miR169 mature miRNA
Sequence 2 - UAGCCAAGGAUGACUUGCCGG - 22
Evidence not_experimental

References

  1. PubMed ID: 21092324
    Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
    Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
    BMC Plant Biol (2010) 10:260