miRBase entry: ssp-MIR437b

Stem-loop ssp-MIR437b


Accession
MI0018183
Description
Saccharum sp. ssp-MIR437b precursor miRNA
Gene family
MIPF0000746; MIR437


Sequence

aagucaaauuucuuuaguuuuggacaaguuuauaaaaaugcacaaacaucacaacaucaaacuacauuuauuagauacaucaugaaauauacuuugauagugcauuuauuugauauugcagauauuaauauauuuuuguauaaacuuggucAAAGUUAGACAAGUUUGACAU
..(((((((((.((((((((((..((((((((((.((((((((............((((((.((.((((..(.((....)))..)))).)).)))))).))))))))..((((((((...))))))))..........))))))))))..)))))))))).)))))))))..

Structure
aa         c          ga          ------------------------------a        aaacaucacaac      c  c    au a  u 
  gucaaauuu uuuaguuuug  caaguuuaua                               aaaugcac            aucaaa ua auuu  u ga a
  ||||||||| ||||||||||  ||||||||||                               ||||||||            |||||| || ||||  | ||  
  CAGUUUGAA AGAUUGAAAc  guucaaauau                               uuuacgug            uaguuu au uaaa  a cu c
UA         C          ug          guuuuuauauaauuauagacguuauaguuua        -----------a      c  a    gu -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssp-miR437b

Accession MIMAT0020281
Description Saccharum sp. ssp-miR437b mature miRNA
Sequence 152 - AAAGUUAGACAAGUUUGACAU - 172
Evidence not_experimental

References

  1. PubMed ID: 21092324
    Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
    Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
    BMC Plant Biol (2010) 10:260