miRBase entry: ssp-MIR528

Stem-loop ssp-MIR528


Accession
MI0018188
Description
Saccharum sp. ssp-MIR528 precursor miRNA
Gene family
MIPF0000868; MIR528

Literature search
1 open access papers mention ssp-MIR528
(2 sentences)

Sequence

UGGAAGGGGCAUGCAGAGGAGcacgaggcuuggcuaaaagccgaccugugcuaugcuaccccucgcuggcucuccugugccugccucuucca
(((((((((((.(((.((((((((.(((.((((((...))))))))))))))..((((........))))...))).))).)))))))))))

Structure
           U   G   ---------------------     g   c      a 
UGGAAGGGGCA GCA AGG                     AGcac agg uuggcu  
||||||||||| ||| |||                     ||||| ||| |||||| a
accuucuccgu cgu ucc                     ucgug ucc agccga  
           c   g   ucucggucgcuccccaucgua     -   -      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssp-miR528

Accession MIMAT0020288
Description Saccharum sp. ssp-miR528 mature miRNA
Sequence 1 - UGGAAGGGGCAUGCAGAGGAG - 21
Evidence not_experimental

References

  1. PubMed ID: 21092324
    Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
    Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
    BMC Plant Biol (2010) 10:260