Stem-loop ssp-MIR1128

Accession

MI0018189

Description

Saccharum sp. ssp-MIR1128 precursor miRNA

Sequence

cUACUACUCCCUCCGUCCCAAAaaacauguaaaucucgauuuccgaggagucaaagaaucuuuaaauuugaccaaguuuauagaugauauuaucuacauuuuaaucucuaauuagguuuauuaugaaacuauauuucauaacuaauccaauuauacuuauuacacaucauaagcaucaauauguuuuuauuuguauuuagucaaaguuaagaaucuuugacuccucgggaagcgaggguuacauucuuuuugggacggagguaguauguuuguag
((((((((.(((((((((((((((..((((((.(((((.((((((((((((((((((.((((....((((((.((((...((((((....))))))............(((((.((((..((((((((.....))))))))..)))).)))))..........(((....((((((....)))))).....))))))).))))))...)))).)))))))))))))))))).))))).))))))..))))))))))))))).)))).....))))

Structure

    -----    C               ac      a     a                  a    uaaa      c    ----------uuauagaugauauuaucuacauuuuaaucuc     a    ua        c 
cUAC     UACU CCUCCGUCCCAAAaa  auguaa ucucg uuuccgaggagucaaaga ucuu    uuugac aagu                                         uaauu gguu  uuaugaaa u
||||     |||| |||||||||||||||  |||||| ||||| |||||||||||||||||| ||||    |||||| ||||                                         ||||| ||||  |||||||| a
gaug     auga ggaggcaggguuuuu  uacauu ggagc aagggcuccucaguuucu agaa    aaacug uuua                                         auuaa cuaa  aauacuuu u
    uuugu    u               cu      g     g                  a    -uug      a    uguuuauuuuuguauaacuacgaauacuacacauuauucau     c    uc        a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR1128

• Accession: MIMAT0020289
• Description: Saccharum sp. ssp-miR1128 mature miRNA
• Sequence: 2 - UACUACUCCCUCCGUCCCAAA - 22
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260