Stem-loop ssp-MIR408d

Accession

MI0018196

Description

Saccharum sp. ssp-MIR408d precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

1 open access papers mention ssp-MIR408d
(1 sentences)

Sequence

gagacagggacgaggcagagcaugggauggggccaucaacaaaauuuccaauuuccguuugcuugcucacaaaacgaaggugccugccucccuggugauggccugaccugagagggcugagagcucagcugguguccugguguuguugcuuccacccCUGCACUGCCUCUUCCCUGGCuc
(((.((((((.(((((((.(((.(((.(((((.((.(((((......(((....(((...(((.((((.((...(..(((((((.(((.....)))...)))...))))....)...)).))))..)))))).....)))))))).)).)))))))).))).))))))).)))))).)))

Structure

   a      c       a   u   a     c  u     aaauuu   -auuu   uuu   -u    a  aaa --ga    ---   --u   u 
gag caggga gaggcag gca ggg ugggg ca caaca      cca     ccg   gcu  gcuc ca   c    aggu   gcc   gcc c
||| |||||| ||||||| ||| ||| ||||| || |||||      |||     |||   |||  |||| ||   |    ||||   |||   ||| c
cuC GUCCCU CUCCGUC CGU ccc accuu gu guugu      ggu     ggu   cga  cgag gu   g    ucca   cgg   ugg c
   G      U       A   C   -     c  u     ------   ccugu   ---   cu    a  cgg agag    guc   uag   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR408d

• Accession: MIMAT0020296
• Description: Saccharum sp. ssp-miR408d mature miRNA
• Sequence: 158 - CUGCACUGCCUCUUCCCUGGC - 178
• Evidence: not_experimental

References

1. PubMed ID: 21092324
   Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
   Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT
   BMC Plant Biol (2010) 10:260