miRBase entry: bdi-MIR5198

Stem-loop bdi-MIR5198


Accession
MI0018230
Description
Brachypodium distachyon bdi-MIR5198 precursor miRNA


Sequence

ccgagcucccucaaucucuuuuccgcuuucugcuuggcuggaaaggaguugggguggauagcagagaGGGGAAAAGAGAUUGAGGGAGcucgg
((((((((((((((((((((((((.(((((((((((.((.((......)).)).))...))))))))).))))))))))))))))))))))))

Structure
                        g         ---  g  g  aa 
ccgagcucccucaaucucuuuucc cuuucugcu   ug cu ga  g
|||||||||||||||||||||||| |||||||||   || || ||   
ggcucGAGGGAGUUAGAGAAAAGG Gagagacga   gu gg uu  g
                        G         uag  g  g  ga 


Annotation confidence Not enough data
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Genome context
1: 3141686-3141778 [+]

Database links

Mature bdi-miR5198

Accession MIMAT0020755
Description Brachypodium distachyon bdi-miR5198 mature miRNA
Sequence 68 - GGGGAAAAGAGAUUGAGGGAG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449