miRBase entry: bdi-MIR5200c

Stem-loop bdi-MIR5200c


Accession
MI0018232
Description
Brachypodium distachyon bdi-MIR5200c precursor miRNA
Gene family
MIPF0001904; MIR5200

Literature search
3 open access papers mention bdi-MIR5200c
(19 sentences)

Sequence

uaaagccuuagggaguaucuacaguggcaaguacuuuuccaccaagaaagaagaauacuaccagUGUAGAUACUCUCUAAGGCUUua
(((((((((((((((((((((((.(((..((((.(((((..........))))).)))).))).)))))))))))))))))))))))

Structure
                       g   ca    c     cacc 
uaaagccuuagggaguaucuaca ugg  agua uuuuc    a
||||||||||||||||||||||| |||  |||| |||||     
auUUCGGAAUCUCUCAUAGAUGU acc  ucau agaag    a
                       g   -a    a     aaag 


Annotation confidence Not enough data
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Genome context
1: 47483433-47483519 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR5200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR5200c

Accession MIMAT0020757
Description Brachypodium distachyon bdi-miR5200c mature miRNA
Sequence 65 - UGUAGAUACUCUCUAAGGCUU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449