Stem-loop mtr-MIR5210

Accession

MI0018250

Description

Medicago truncatula mtr-MIR5210 precursor miRNA

Sequence

uauguugaacaccuugacccgcacauuuagccuguuauuuuaccuucauuguugaaguuuugaauucugcucaaaacuagcucgcUAAAUGUGUUGGAAUUAAGGUUuuuugauggu
...((((((.(((((((((.(((((((((((..((((.......((((....))))(((((((.......)))))))))))..))))))))))).))..)))))))..))))))...

Structure

uau      -c       --  c           cu    uuuuaccuucauuguugaa       au 
   guugaa  accuuga  cc gcacauuuagc  guua                   guuuuga  u
   ||||||  |||||||  || |||||||||||  ||||                   |||||||  c
   uaguuu  UGGAAUU  GG UGUGUAAAUcg  cgau                   caaaacu  u
ugg      uU       AA  U           cu    -------------------       cg 

Annotation confidence Not enough data

Genome context

chr3: 22394767-22394883 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5210

Mature mtr-miR5210

• Accession: MIMAT0021143
• Description: Medicago truncatula mtr-miR5210 mature miRNA
• Sequence: 86 - UAAAUGUGUUGGAAUUAAGGUU - 107
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553