Stem-loop mtr-MIR2592ae

Accession

MI0018267

Description

Medicago truncatula mtr-MIR2592ae precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ae
(2 sentences)

Sequence

uagucggaaugugcauuccaacuacaacaauugucuuaccuuugaauggguaaauuuaaacaugccaaCAACAGGACUCAAGCAUUUCGucccgcauucaugcuuuuccuuugaaaagaauaaauuuuugguaggcuugcuuuagaugaugauauucaagugccaacgaaacgagguucauuccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaaucuuuucaaaggaaaaauaugaacgcuggacgaaaugcucgaguuauggccguuuggcaaguuugaauuaccucauuucagagguaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.(((((((((((((((((((((((((((((((((((((((((((.(((((((.(((((((..((.(((((.((((((((((((.((.((((((.((((((((((((((((.((((((((((....(((.(.(((((((((.(.((((.(((((.........(((((......))))).))))))))).).)))))))))).)))....)))))))))).)))))))))))))))).)))))).)).)))))))))))).))))).))...).)))))).)))))))))))).)).)))))))))))))))))))))))))))))))))))).)).))....

Structure

uaguc  -  u                                    -  -     a       a      - -AA  G     A            c  a      c                a          guag   u c         u a    c     ccaacgaaa     uu 
     gg aa gugcauuccaacuacaacaauugucuuaccuuugaa ug gguaa uuuaaac ugccaa C   CA GACUC AGCAUUUCGucc gc uucaug uuuuccuuugaaaaga uaaauuuuug    gcu g uuuagauga g uauu aagug         cgagg  c
     || || |||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| |   || ||||| |||||||||||| || |||||| |||||||||||||||| ||||||||||    ||| | ||||||||| | |||| |||||         |||||   
     cc uu cacguaagguugauguuguuaacagaauggagacuu ac ccauu aaguuug acgguu g   gu uugag ucguaaagcagg cg aaguau aaaaggaaacuuuucu auuuaagaac    cga c aaaucuacu c auaa uucac         guucc  a
-aauc  a  c                                    u  u     -       a      u ccg  a     c            u  c      a                a          aaua   c -         u c    -     --------a     uu 

Annotation confidence Not enough data

Genome context

chr3: 36122943-36123293 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592ae

Mature mtr-miR2592ae

• Accession: MIMAT0021161
• Description: Medicago truncatula mtr-miR2592ae mature miRNA
• Sequence: 69 - CAACAGGACUCAAGCAUUUCG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010