Stem-loop mtr-MIR2592ai

Accession

MI0018271

Description

Medicago truncatula mtr-MIR2592ai precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ai
(2 sentences)

Sequence

caguuggaaugugcauuccaaccacaacaauuguguuaccuuugaaugggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcgagcacuucauguuuucccuuugaaaagaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccacagaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaauauuuucaaaggagaaacaugaggugcucgcgaaaugcucgagucuuguuguuugacaaguuugaauuaccccauucaaaggaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.((((((((((((.(((((((((((.((.((((((((((((...(((((((((.((..((((((((((((((.((((((((((.((((((((((((((((.((((((((((...(((((((((((...(((.(.(((((((((.((((((.(((((.((.((.(((((...))))).)))).))))))))))).)))))))))).)))...)))))))))))...)))))))))).)))))))))))))))))))))))))).))))))))))))))..)).)))))))))..)))))))))))))).))))))))))).)))))))))))).)).))....

Structure

caguu  -  u            c           g  a            aua         c  ca              A          c                c          gaa           gag   u c         u      c     c  c  a     g 
     gg aa gugcauuccaac acaacaauugu uu ccuuugaauggg   aauucaaac ug  aaaCAACAGGACUC AGCAUUUCGC gagcacuucauguuuu ccuuugaaaa   uaaauuuuugu   gcu g uuuagauga gguauu aagug ca ag auuga  
     || || |||||||||||| ||||||||||| || ||||||||||||   ||||||||| ||  |||||||||||||| |||||||||| |||||||||||||||| ||||||||||   |||||||||||   ||| | ||||||||| |||||| ||||| || || ||||| g
     cc uu cacguaagguug uguuguuaaca aa ggaaacuuaccc   uuaaguuug ac  uuuguuguucugag ucguaaagcg cucguggaguacaaag ggaaacuuuu   auuuaagaaca   cga c aaaucuacu ccauaa uucac gu uc uaacu  
-aauc  a  c            a           g  -            -ca         a  ag              c          -                a          aua           aua   c -         u      -     a  -  c     u 

Annotation confidence Not enough data

Genome context

chr5: 8318707-8319057 [+]

Mature mtr-miR2592ai

• Accession: MIMAT0021165
• Description: Medicago truncatula mtr-miR2592ai mature miRNA
• Sequence: 71 - CAACAGGACUCAAGCAUUUCGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010