Stem-loop mtr-MIR2592al

Accession

MI0018274

Description

Medicago truncatula mtr-MIR2592al precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592al
(2 sentences)

Sequence

uaguuggaaugugcauuccaacuacaacaauugucuuaccuuugaaugggguaaauucaaacuagccaaaCAACAGGACUCAAGCAUUUCGCcucgcguucauguuuuuccuuugaaaauuauaaauuuuuguuaggcuuucuuuagaugaugauauucaagugccaacgaaaugagguucauucguugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaaucuuuugaaaggaaaaauaugaacgaugggccaaaugcuugagucauggccguuuggcaaguuugaguuaccccaauucagagguaagacaauuguuguaguuggaaugcaccuuacccuaa
(((..((((.((((((((((((((((((((((((((((((((((((((((((((.((((((((.(((((((..((.(((((((((((((.((((..((((((((((((((((((.((((...(((((((((((((.(((...(((((((((.(.((((.(((((.(((((((.(((...)))))))))).))))))))).).)))))))))..))).)))))))))))))...)))).))))))))))))))))))..)))).))))))))))))).))...))))))).))))))))))))))).))))))))))))))))))))))))))))))))))))).)).))))).

Structure

-   uu  -  u                                     -       a        a       -AA  G             C    cg                  g    uua             g   uuc         u a    c     c       a   g 
 uag  gg aa gugcauuccaacuacaacaauugucuuaccuuugaau gggguaa uucaaacu gccaaaC   CA GACUCAAGCAUUU GCcu  cguucauguuuuuccuuu aaaa   uaaauuuuuguua gcu   uuuagauga g uauu aagug caacgaa uga  
 |||  || || ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||   || ||||||||||||| ||||  |||||||||||||||||| ||||   ||||||||||||| |||   ||||||||| | |||| ||||| ||||||| ||| g
 auc  cc uu cacguaagguugauguuguuaacagaauggagacuua ccccauu gaguuuga cgguuug   gu cugaguucguaaa cggg  gcaaguauaaaaaggaaa uuuu   auuuaagaacaau cga   aaaucuacu c auaa uucac guugcuu acu  
a   --  a  c                                     a       -        a       ccg  a             c    ua                  g    cua             a   -cc         u c    -     a       -   u 

Annotation confidence Not enough data

Genome context

chr7: 13475564-13475916 [-]

Mature mtr-miR2592al

• Accession: MIMAT0021168
• Description: Medicago truncatula mtr-miR2592al mature miRNA
• Sequence: 71 - CAACAGGACUCAAGCAUUUCGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010