miRBase entry: mtr-MIR5216b

Stem-loop mtr-MIR5216b


Accession
MI0018280
Description
Medicago truncatula mtr-MIR5216b precursor miRNA
Gene family
MIPF0001362; MIR5216


Sequence

aauauucauuaugggcucagugacaguugccguugcuugagucaaaguaguaccgauagaggccaaguucgccccaggaaucgggccacuguuagcaguaccagaagugccugcugcaguaUUAGGAGUGAAAAACGGUGGAAguccauaaggaaaccc
....(((.(((((((((.........((((((((..((.(.((.................((((..((((.......))))..))))(((((.((((((((.....))).)))))))))).....)).).)).)))))))).))))))))).)))....

Structure
aaua   a         cagugacag        gc  g g  aaaguaguaccgauagaggccaaguucgccccaggaaucgggcc     u     -   c 
    uuc uuaugggcu         uugccguu  uu a uc                                            acugu agcag uac a
    ||| |||||||||         ||||||||  || | ||                                            ||||| ||||| ||| g
    aag aauaccugA         GGUGGCAA  AA U AG                                            ugacg ucguc gug a
ccca   g         --------A        -A  G G  ---------------------------------------GAUUa     -     c   a 


Annotation confidence Not enough data
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Genome context
chr2: 15937619-15937777 [+]

Database links

Mature mtr-miR5216b

Accession MIMAT0021174
Description Medicago truncatula mtr-miR5216b mature miRNA
Sequence 122 - UUAGGAGUGAAAAACGGUGGAA - 143
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010