miRBase entry: mtr-MIR2592aq

Stem-loop mtr-MIR2592aq


Accession
MI0018294
Description
Medicago truncatula mtr-MIR2592aq precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592aq
(2 sentences)

Sequence

uuaagguaaggugcauuccaacugcaacaauugucuuaccucugaaaugggguaauucaaacuugucaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaacuucauuucguuggcaauugaauaccaucaucuaaagcaagccuaacaaaaauuuauuuuuuucaaaggaaaacaugaaugccgggugaaauguuugaguccuguuguuuggcaaguuugaauugaccccauucaaagguaagacaauuguuguaguuggaaugcacauuccaacug
....((....(((((((((((((((((((((((((((((((.((((.(((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.(((((((((.((((((...(((((((((((((...))))))).))))))....)))))).))))))))).).)))))))))).)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))).)))))))))))))))))))))))))))))))...)).....

Structure
-uuaa  uaag                               c    a      -                     c                                  u            u      c          - G         A      -aag      -       a 
     gg    gugcauuccaacugcaacaauugucuuaccu ugaa uggggu aauucaaacuugucaaacggc aggacucaagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuAGGCU G UUUAGAUGA GGUAuu    ugucaa ggaauga  
     ||    ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| | ||||||||| ||||||    |||||| ||||||| c
     cc    cacguaagguugauguuguuaacagaaugga acuu acccca uuaaguuugaacgguuuguug uccugaguuuguaaagugggccguaaguacaaaa ggaaacuuuuuu auuuaa aacaauccga c aaaucuacu ccauaa    acgguu cuuuacu  
gucaa  -uua                               a    -      g                     -                                  -            u      a          a g         a      guua      g       u 


Annotation confidence Not enough data
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Genome context
chr3: 12319184-12319535 [-]

Database links

Mature mtr-miR2592aq

Accession MIMAT0021188
Description Medicago truncatula mtr-miR2592aq mature miRNA
Sequence 136 - AGGCUGGUUUAGAUGAAGGUA - 156
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010