Stem-loop mtr-MIR2592as

Accession

MI0018296

Description

Medicago truncatula mtr-MIR2592as precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592as
(2 sentences)

Sequence

aucaacaacuugauuccgccagaagaucgucauuaguuaggguaaagugcauuccaacugcaacaauugucuuaccuuugaaugagauaaauucaaacaugucaaacaacaggacucgagcauuucgcucggcauucauguuuuucuuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguuggcaauugaauaccaucaucuaaagcaagccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugucgagcgaaaugcuugaguccaguauguuugguagguuugaauuuaucacauucaaauguaagauaauuguuggaguuggaaugaacauuccaagugcaacaauugucuuacucuggauggggcaau
.........(((.((((((((((((((.((..((.((...((.((.((.((((((((((.(((((((((((((((.((((((((.(((((((((((((.(((((((((((.(((((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.(((((((((.((((((...(((((((((((((...))))))).))))))....)))))).))))))))).).)))))))))).)))))).))))))))))))))))))))))))))))))))))))))))))))).)).))))))))).))))))))))))).)))))))).))))))))))))))).)))))))))).)).))))....))))..)).))))...))))).)))))))).

Structure

aucaacaac   a     -     ---    c  ca  a  -uag  u  a  g          g               c        a             a         -  a                                 u            u      c          - G         A      -aag      -       a 
         uug uuccg ccaga   agau gu  uu gu    gg aa gu cauuccaacu caacaauugucuuac uuugaaug gauaaauucaaac ugucaaaca ac ggacucgagcauuucgcucggcauucauguuuu cuuuugaaaaga uaaauu uuguuAGGCU G UUUAGAUGA GGUAuu    ugucaa ggaauga  
         ||| ||||| |||||   |||| ||  || ||    || || || |||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| | ||||||||| ||||||    |||||| ||||||| c
         aac ggggu ggucu   ucug ua  aa cg    cc uu ca guaagguuga guuguuaauagaaug aaacuuac cuauuuaaguuug augguuugu ug ccugaguucguaaagcgagcuguaaguacaaaa ggaaacuuuucu auuuaa aacaauccga c aaaucuacu ccauaa    acgguu cuuuacu  
--------u   -     a     cau    u  ac  -  ugaa  -  a  a          g               u        a             g         a  a                                 -            u      a          a g         a      guua      g       c 

Annotation confidence Not enough data

Genome context

chr3: 37750179-37750596 [-]

Mature mtr-miR2592as

• Accession: MIMAT0021190
• Description: Medicago truncatula mtr-miR2592as mature miRNA
• Sequence: 171 - AGGCUGGUUUAGAUGAAGGUA - 191
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010