miRBase entry: mtr-MIR2592bc

Stem-loop mtr-MIR2592bc


Accession
MI0018306
Description
Medicago truncatula mtr-MIR2592bc precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592bc
(2 sentences)

Sequence

aauuuuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguugucacuugaauaucaucaucuaaagcaagccuaacaaaaauu
((((((((((((((((.(((((((((.(((((((((((.((((((((((...))))))).))).)))))).))))).))))))))).).)))))))))))))))

Structure
               - G         A     -      u   -       a 
aauuuuuguuAGGCU G UUUAGAUGA GGUAu uaagug caa ggaauga  
||||||||||||||| | ||||||||| ||||| |||||| ||| ||||||| c
uuaaaaacaauccga c aaaucuacu cuaua guucac guu cuuuacu  
               a g         a     a      u   g       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 18079525-18079628 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592bc
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592bc

Accession MIMAT0021200
Description Medicago truncatula mtr-miR2592bc mature miRNA
Sequence 11 - AGGCUGGUUUAGAUGAAGGUA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010