miRBase entry: mtr-MIR2592bd

Stem-loop mtr-MIR2592bd


Accession
MI0018307
Description
Medicago truncatula mtr-MIR2592bd precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592bd
(2 sentences)

Sequence

accugccaaacaacaggacucgagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaauaaaccagcagaauaccaucaucuaaaacacgccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugcggggugaaaugcuugaguccuguuguuugacagguu
(((((.((((((((((((((((((((((((((((.(((((((((((((.((((((((((((.((((((.(((((((((((..((((((((.((((((...(((...((......)).))).)))))).))))))))..)).))))))))).)))))).))))))))))))))))))))))))).)))))))))))))))))))))))))))).))))).

Structure
-     c                            g             u            u      c         -  GU        A      aag   caa  aa 
 accug caaacaacaggacucgagcauuucgcuc gcauucauguuuu ccuuugaaaaga uaaauu uuguuAGGC UG  UUAGAUGA GGUAuu   ugu   gg  u
 ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| ||  |||||||| ||||||   |||   ||   
 uggac guuuguuguccugaguucguaaaguggg cguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac  aaucuacu ccauaa   acg   cc  a
u     a                            g             -            u      a         c  aa        a      --g   --a  aa 


Annotation confidence Not enough data
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Genome context
chr7: 13077376-13077594 [+]

Database links

Mature mtr-miR2592bd

Accession MIMAT0021201
Description Medicago truncatula mtr-miR2592bd mature miRNA
Sequence 75 - AGGCUGGUUUAGAUGAAGGUA - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010