miRBase entry: mtr-MIR2670e

Stem-loop mtr-MIR2670e


Accession
MI0018313
Description
Medicago truncatula mtr-MIR2670e precursor miRNA
Gene family
MIPF0000855; MIR2670


Sequence

uuugagggaaguagugguccguuagguuggggaaaaagacaucaucccuugagguaaaauuagguuugcuuccuuuuacucccaaaaucuuuuuaccguggguaaaaagaaucaucauggggguauaaaaggaaccaaauuuaaauuuaaaucaaggggucuugauguauuuuUCUCAACAGGACGGAUCACUAcuuuacccaag
.(((.((((((((((((((((((..(((((((((((..((((((((((((((..((((.(((((((((.(((((((((((((((...((((((((((...)))))))))).......))))))))..))))))).))))))))).))))..))))))))...)))))).)))))))))))..)))))))))))))))).))))).

Structure
u   a  -                ag           ag      ---        gg    a         c       --        ----aaa          g 
 uug gg gaaguagugguccguu  guuggggaaaa  acauca   ucccuuga  uaaa uuagguuug uuccuuu  uacuccca       ucuuuuuacc  
 ||| || ||||||||||||||||  |||||||||||  ||||||   ||||||||  |||| ||||||||| |||||||  ||||||||       |||||||||| u
 aac cc uuucAUCACUAGGCAG  CAACUCUuuuu  uguagu   ggggaacu  auuu aauuuaaac aaggaaa  augggggu       agaaaaaugg  
g   -  a                GA           -a      ucu        aa    a         c       au        acuacua          g 


Annotation confidence Not enough data
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Genome context
chr2: 19466312-19466516 [-]

Database links

Mature mtr-miR2670e

Accession MIMAT0021208
Description Medicago truncatula mtr-miR2670e mature miRNA
Sequence 174 - UCUCAACAGGACGGAUCACUA - 194
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010