miRBase entry: mtr-MIR2670f

Stem-loop mtr-MIR2670f


Accession
MI0018314
Description
Medicago truncatula mtr-MIR2670f precursor miRNA
Gene family
MIPF0000855; MIR2670


Sequence

ugggggaaguAGUGGUCUGUUAGGUUGGGGAaaaagacaucaucccgugagguaaaauuagguuugcuuccuuuuacucccaaaaucuuuuuaccgugggguaaaaagaaucaucauggggguauaaaaggaaccaaauuuaaauuuaacucaaggggucuugaugucguuuuccccaacaugacagaucacuauuuucccca
((((((((((((((((((((((.(((((((((((.(((((((((((.((((.((((.(((((((((.(((((((((((((((...((((((((((....)))))))))).......))))))))..))))))).))))))))).)))).)))).))))...))))))).))))))))))).))))))))))))))))))))))

Structure
                      G           a       ---    g    g    a         c       --        ----aaa          g 
ugggggaaguAGUGGUCUGUUA GUUGGGGAaaa gacauca   uccc ugag uaaa uuagguuug uuccuuu  uacuccca       ucuuuuuacc u
|||||||||||||||||||||| ||||||||||| |||||||   |||| |||| |||| ||||||||| |||||||  ||||||||       ||||||||||  
accccuuuuaucacuagacagu caaccccuuuu cuguagu   gggg acuc auuu aauuuaaac aaggaaa  augggggu       agaaaaaugg g
                      a           g       ucu    a    a    a         c       au        acuacua          g 


Annotation confidence Not enough data
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Genome context
AC235487.1: 136435-136637 [-]

Database links

Mature mtr-miR2670f

Accession MIMAT0021209
Description Medicago truncatula mtr-miR2670f mature miRNA
Sequence 11 - AGUGGUCUGUUAGGUUGGGGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010