miRBase entry: mtr-MIR2670g

Stem-loop mtr-MIR2670g


Accession
MI0018315
Description
Medicago truncatula mtr-MIR2670g precursor miRNA
Gene family
MIPF0000855; MIR2670


Sequence

uggaggaaguAGUGGUCUGUUAGGUUGGGGAaaaagacaucaucccuugagguaaaauuagguuugcuuccauuuacuuccaaaaucuuuuuaccauggguaaaaagaaucaucauggggguauaaaaggaaccaaauuuaaauuuaacucaaggggucuugaugucguuuuucccaacauaacagaucacuauuuucccca
(((.((((((((((((((((((.(((((((((((.((((((((((((((((.((((.(((((((((.((((...((((((((...((((((((((...)))))))))).......)))))))).....)))).))))))))).)))).)))))))))...))))))).))))))))))).)))))))))))))))))).)))

Structure
   a                  G           a       ---         g    a         c    --auu        ----aaa          a 
ugg ggaaguAGUGGUCUGUUA GUUGGGGAaaa gacauca   ucccuugag uaaa uuagguuug uucc     uacuucca       ucuuuuuacc  
||| |||||||||||||||||| ||||||||||| |||||||   ||||||||| |||| ||||||||| ||||     ||||||||       |||||||||| u
acc cuuuuaucacuagacaau caacccuuuuu cuguagu   ggggaacuc auuu aauuuaaac aagg     augggggu       agaaaaaugg  
   c                  a           g       ucu         a    a         c    aaaau        acuacua          g 


Annotation confidence Not enough data
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Genome context
chr5: 7404689-7404890 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2670g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2670g

Accession MIMAT0021210
Description Medicago truncatula mtr-miR2670g mature miRNA
Sequence 11 - AGUGGUCUGUUAGGUUGGGGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010