miRBase entry: mtr-MIR5228

Stem-loop mtr-MIR5228


Accession
MI0018317
Description
Medicago truncatula mtr-MIR5228 precursor miRNA


Sequence

ugcaacuuUCUGGUGUACAACUUGAUGGAgauuuuaaauaucuuucaagaaauuugagauggcuacacuggaauggauuuccguuagcaugcauaccuucaaacuucuaucaaagaaauauaguuuccauugaguuagaaaacagcagugucaa
.........(((.(((.((((((((((((((((.......(((((..((((.(((((((((((((.((.((((.....))))))))))...)))...)))))).))))...))))).....))))))))))))))).)...))).)))......

Structure
ugcaacuuU   G   --A -               uuaaaua     -ca    a      ---   ---    c  u    u 
         CUG UGU   C AACUUGAUGGAgauu       ucuuu   agaa uuugag   aug   gcua ac ggaa g
         ||| |||   | |||||||||||||||       |||||   |||| ||||||   |||   |||| || |||| g
         gac aca   g uugaguuaccuuuga       agaaa   ucuu aaacuu   uac   cgau ug ccuu a
---aacugu   g   aaa a               --uauaa     cua    c      cca   gua    -  -    u 


Annotation confidence Not enough data
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Genome context
chr4: 3475204-3475357 [+]

Database links

Mature mtr-miR5228

Accession MIMAT0021212
Description Medicago truncatula mtr-miR5228 mature miRNA
Sequence 9 - UCUGGUGUACAACUUGAUGGA - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010