Stem-loop mtr-MIR5234

Accession

MI0018324

Description

Medicago truncatula mtr-MIR5234 precursor miRNA

Gene family

MIPF0001624; MIR1536

Sequence

auaauauuaugccuucuuuguuucugacauaucaacaucuuccuucccauuugaaaagauguuuugccuauugcucgauuuuuccaaagggcuaucccuuuaauaggaagaaauugaUUUUGUUGUGGAUGGCAGAAGgcuuccucgaacauu
..........(((((((((((((.(((((.(((((..(((((((.(((.((((.((((((.....((.....))...)))))).))))))).............)))))))..)))))..))))).)))))).))))))).............

Structure

---auaauauuau       -      c     -u     ca       ------------u   a    a      guuuu  c 
             gccuucu uuguuu ugaca  aucaa  ucuuccu             ccc uuug aaagau     gc u
             ||||||| |||||| |||||  |||||  |||||||             ||| |||| ||||||     || a
             cgGAAGA GGUAGG GUUGU  Uaguu  agaagga             ggg aaac uuuuua     cg u
uuacaagcuccuu       C      U     UU     aa       uaauuucccuauc   -    c      --gcu  u 

Annotation confidence Not enough data

Genome context

chr3: 11909644-11909796 [+]

Mature mtr-miR5234

• Accession: MIMAT0021219
• Description: Medicago truncatula mtr-miR5234 mature miRNA
• Sequence: 118 - UUUUGUUGUGGAUGGCAGAAG - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010