miRBase entry: mtr-MIR5235a

Stem-loop mtr-MIR5235a


Accession
MI0018325
Description
Medicago truncatula mtr-MIR5235a precursor miRNA
Gene family
MIPF0001297; MIR5235


Sequence

aaccacuuuaAUAAGGUCAAUGAUUGGCGUGaagcuuuagcucaagcaacuaguuuggcuggaugggacucucguaaauacaugcuugaaucagaacucguggaagacauug
..((((........(((...(((((((((((.....(((((.(((((.....))))))))))(((((...))))).....))))))..)))))..))).)))).........

Structure
-------aa    uuuaAUAA   CAA     --      -------------aagcu     u     a 
         ccac        GGU   UGAUU  GGCGUG                  uuagc caagc a
         ||||        |||   |||||  ||||||                  ||||| ||||| c
         ggug        uca   acuaa  ucguac                  ggucg guuug u
guuacagaa    -------c   -ag     gu      auaaaugcucucagggua     -     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR5235a

Accession MIMAT0021220
Description Medicago truncatula mtr-miR5235a mature miRNA
Sequence 11 - AUAAGGUCAAUGAUUGGCGUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010