miRBase entry: mtr-MIR5236e

Stem-loop mtr-MIR5236e


Accession
MI0018331
Description
Medicago truncatula mtr-MIR5236e precursor miRNA
Gene family
MIPF0001282; MIR5236


Sequence

ggaucauuuugaUGAAUUUCGGGCAGAUUUGGUgggaaauagggggaaaucuugcuguucuugacuuugggcaagcacaggccaaacaugcaguucaacauuuguucaugccucg
.((.((...((.((((((....(((..((((((......(((((.....)))))((((.((((........)))).))))))))))..))))))))).))..)).))........

Structure
-------g  u  uuu  a      UCGG   GA      gggaaauagggggaaaucuug    u    acu 
        ga ca   ug UGAAUU    GCA  UUUGGU                     cugu cuug   u
        || ||   || ||||||    |||  ||||||                     |||| ||||    
        cu gu   ac acuuga    cgu  aaaccg                     gaca gaac   u
gcuccgua  u  -uu  a      ----   ac      ---------------------    c    ggg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR5236e

Accession MIMAT0021226
Description Medicago truncatula mtr-miR5236e mature miRNA
Sequence 13 - UGAAUUUCGGGCAGAUUUGGU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010