miRBase entry: mtr-MIR482

Stem-loop mtr-MIR482


Accession
MI0018337
Description
Medicago truncatula mtr-MIR482 precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
3 open access papers mention mtr-MIR482
(13 sentences)

Sequence

ggggaaggcauaGGCAUGGGAUAGUAGGGAAGAagugauaacagcauaugcuuauuauggugcuucuuCUUACCUACACCUCCCAUGCCuacguuuucccucua
(((((((((.(((((((((((..(((((((((((((.((((.(((....)))..))))...))))))))...)))))...))))))))))).)))))))))...

Structure
---         a           -UA     ---        --g    -c   a 
   ggggaaggc uaGGCAUGGGA   GUAGG   GAAGAagu   auaa  agc u
   ||||||||| |||||||||||   |||||   ||||||||   ||||  |||  
   ucccuuuug auCCGUACCCU   CAUCC   Cuucuucg   uauu  ucg a
auc         c           CCA     AUU        ugg    au   u 


Annotation confidence Not enough data
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Genome context
AC235678.1: 65790-65893 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR482
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR482-5p

Accession MIMAT0021232
Description Medicago truncatula mtr-miR482-5p mature miRNA
Sequence 13 - GGCAUGGGAUAGUAGGGAAGA - 33
Evidence experimental
Illumina [1-2]

Mature mtr-miR482-3p

Accession MIMAT0027102
Description Medicago truncatula mtr-miR482-3p mature miRNA
Sequence 69 - CUUACCUACACCUCCCAUGCC - 89
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105