miRBase entry: mtr-MIR5239

Stem-loop mtr-MIR5239


Accession
MI0018338
Description
Medicago truncatula mtr-MIR5239 precursor miRNA


Sequence

auguuucguuUGGGAGAAAAGAUAGAAUGUGgaauucgauagacaugauccguaguuuacuggaucguccacuaagccacguucuauauuuucuccccaccccaaaaccug
...........(((((((((.(((((((((((.........(((..((((((........))))))))).......))))))))))).)))))))))..............

Structure
---auguuucguuU         G           aauucgaua   au      uag 
              GGGAGAAAA AUAGAAUGUGg         gac  gauccg   u
              ||||||||| |||||||||||         |||  ||||||    
              cccucuuuu uaucuugcacc         cug  cuaggu   u
guccaaaaccccac         a           --gaaucac   --      cau 


Annotation confidence Not enough data
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Genome context
AC225474.24: 38945-39055 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mtr-MIR5239
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5239

Accession MIMAT0021233
Description Medicago truncatula mtr-miR5239 mature miRNA
Sequence 11 - UGGGAGAAAAGAUAGAAUGUG - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553