Stem-loop mtr-MIR5251

Accession

MI0018352

Description

Medicago truncatula mtr-MIR5251 precursor miRNA

Sequence

ucucggagaauuacAGUAGAUCUAGUUGGUGUCUUcuugaacuugaaaaaaucauggaaaaccgugguacucauggucaaauaguuauaccaauauuuuaccauauugauccagccauuguucgucguca
....(((..(.((..(((((....((((((((((..((((.(.(((....(((((((....)))))))..))).).))))..))..))))))))..)))))..)).)..)))..................

Structure

--------------ucuc   ga u  cA     UCUA        --  Uc    a u   aaaa       a 
                  gga  a ua  GUAGA    GUUGGUGU  CU  uuga c uga    aucaugg a
                  |||  | ||  |||||    ||||||||  ||  |||| | |||    |||||||  
                  ccu  u au  cauuu    uaaccaua  ga  aacu g acu    uggugcc a
acugcugcuuguuaccga   ag u  ac     --ua        uu  ua    g u   --ca       a 

Annotation confidence Not enough data

Genome context

chr5: 29453224-29453353 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5251

Mature mtr-miR5251

• Accession: MIMAT0021247
• Description: Medicago truncatula mtr-miR5251 mature miRNA
• Sequence: 15 - AGUAGAUCUAGUUGGUGUCUU - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010