miRBase entry: mtr-MIR5253

Stem-loop mtr-MIR5253


Accession
MI0018355
Description
Medicago truncatula mtr-MIR5253 precursor miRNA


Sequence

gauuaucggagGAUGAAAAUGAUUAUGUUGGAggguuaggguuuggguuucaagcauccauucaggauagauguuuuggacaacaacucaucuucaaggguuuucaaucgauuaucggaagaugaaaaugauugaaaacgcuugaagaugaguuguuguccacagcaucuaucccauaauggaugcuugaaacccaaaaccuaacccuucaacauaaucauuuucauauucggauaauc
(((((((.(((.((((((((((((((((((((((((((((..((((((((((((((((((((..(((((((((((.((((((((((((((((((((((.(((((((((((.(((((....)))))...))))))))))).)))))))))))))))))))))).)))))))))))...))))))))))))))))))))..)))))))))))))))))))))))))))).))).)))))))

Structure
       g   G                            gu                    -ca           u                      g           --a     g 
gauuauc gag AUGAAAAUGAUUAUGUUGGAggguuagg  uuggguuucaagcauccauu   ggauagauguu uggacaacaacucaucuucaag guuuucaaucg   uuauc g
||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||| |||||||||||||||||||||| |||||||||||   |||||  
cuaauag cuu uacuuuuacuaauacaacuucccaaucc  aacccaaaguucguagguaa   ccuaucuacga accuguuguugaguagaaguuc caaaaguuagu   aguag a
       g   a                            aa                    uac           c                      g           aaa     a 


Annotation confidence Not enough data
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Genome context
chr6: 12560384-12560622 [+]

Database links

Mature mtr-miR5253

Accession MIMAT0021251
Description Medicago truncatula mtr-miR5253 mature miRNA
Sequence 12 - GAUGAAAAUGAUUAUGUUGGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010