miRBase entry: mtr-MIR5254

Stem-loop mtr-MIR5254


Accession
MI0018356
Description
Medicago truncatula mtr-MIR5254 precursor miRNA


Sequence

gauguguagcugaAGGAGGUGGAAGCAUUUGUGAcagaauuguauaagaaaagaauaaucacaaugccuuuccaguuuagcacauucaaguggg
((.((((.(((((....(.((((((((((.((((....(((.(........).)))..)))))))))..))))).)))))))))))).......

Structure
-------  u    a     AGGA G     --     U    caga   g aua 
       ga gugu gcuga    G UGGAA  GCAUU GUGA    auu u   a
       || |||| |||||    | |||||  ||||| ||||    ||| |    
       cu uaca cgauu    u accuu  cguaa cacu    uaa a   g
gggugaa  -    -     ---- g     uc     -    --aa   g aaa 


Annotation confidence Not enough data
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Genome context
chr6: 16973918-16974011 [-]

Database links

Mature mtr-miR5254

Accession MIMAT0021252
Description Medicago truncatula mtr-miR5254 mature miRNA
Sequence 14 - AGGAGGUGGAAGCAUUUGUGA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010