miRBase entry: mtr-MIR5260

Stem-loop mtr-MIR5260


Accession
MI0018364
Description
Medicago truncatula mtr-MIR5260 precursor miRNA


Sequence

gucaacaaauUUUGUAUUGUUGACAUGGCUUuguugcaauuuaaucaaggaaauuacacucgaugcagauauauuucuaacaauacaaaaacaaacaa
.........((((((((((((((.(((..(((((.........(((.((.........)).))))))))..))).)).))))))))))))........

Structure
gucaacaaa            -  C   GC     ugcaauuua   a  gaa 
         uUUUGUAUUGUU GA AUG  UUugu         auc ag   a
         |||||||||||| || |||  |||||         ||| ||   u
         aaaacauaacaa cu uau  agacg         uag uc   u
-aacaaaca            u  u   au     ---------   c  aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 18805493-18805590 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5260
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5260

Accession MIMAT0021260
Description Medicago truncatula mtr-miR5260 mature miRNA
Sequence 11 - UUUGUAUUGUUGACAUGGCUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010