miRBase entry: mtr-MIR172b

Stem-loop mtr-MIR172b


Accession
MI0018368
Description
Medicago truncatula mtr-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
7 open access papers mention mtr-MIR172b
(30 sentences)

Sequence

uguuugcagauguagcaucaucaagauucauaugugaaugaugcagaguggaacugcuaauauuucaauugaucuuuugaaauaAGAAUCUUGAUGAUGCUGCAUcagccauau
.....((.(((((((((((((((((((((.............((((.......))))...((((((((........)))))))).))))))))))))))))))))).)).....

Structure
uguuu  a                     auaugugaaugaugcagaguggaacugcuaa        uug 
     gc gauguagcaucaucaagauuc                               uauuucaa   a
     || |||||||||||||||||||||                               ||||||||    
     cg cUACGUCGUAGUAGUUCUAAG                               auaaaguu   u
uauac  a                     ------------------------------A        uuc 


Annotation confidence Not enough data
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Genome context
AC235487.1: 197953-198066 [+]

Database links

Mature mtr-miR172b

Accession MIMAT0021264
Description Medicago truncatula mtr-miR172b mature miRNA
Sequence 85 - AGAAUCUUGAUGAUGCUGCAU - 105
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367

  3. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553