miRBase entry: mtr-MIR5281b

Stem-loop mtr-MIR5281b


Accession
MI0018424
Description
Medicago truncatula mtr-MIR5281b precursor miRNA
Gene family
MIPF0000382; MIR1122


Sequence

uuuucuguaauacuaccuccgguccuauuuauaagagaaauuuagaucaacauaagugaauguauuuggacugaauuuuuaacuagauacaucaacuuuuguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacuuggaaucac
..(((((...((((.((((((((((((((((((((((((.(((.(.((((((.((((..((((((((((.............))))))))))..)))).)))))).).))).)))))))))))))))))))))))).))))..)))))....

Structure
--uu     uaa    a                        a   a a      u    ga          acuga 
    uucug   uacu ccuccgguccuauuuauaagagaa uuu g ucaaca aagu  auguauuugg     a
    |||||   |||| |||||||||||||||||||||||| ||| | |||||| ||||  ||||||||||     u
    aaggu   auGA GGAGGCCAGGAUAAAUAUUCUcuu aaa c aguugu uuca  uacauagauc     u
cacu     -uc    G                        a   c c      u    ac          aauuu 


Annotation confidence Not enough data
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Genome context
chr8: 21790635-21790786 [-]

Database links

Mature mtr-miR5281b

Accession MIMAT0021321
Description Medicago truncatula mtr-miR5281b mature miRNA
Sequence 116 - UCUUAUAAAUAGGACCGGAGGGAG - 139
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010