miRBase entry: mtr-MIR5294c

Stem-loop mtr-MIR5294c


Accession
MI0018465
Description
Medicago truncatula mtr-MIR5294c precursor miRNA
Gene family
MIPF0001303; MIR5294


Sequence

cccaaugagagaucccugcccucagccguuuagcuauuuaaaugucaucccaucagaugguuaaacuauucuaaacauucugguGCUAAACGGAAUGAGGGUAGUCAUccgucucau
....(((((((((..(((((((((.(((((((((.................((((((..(((...........)))..)))))))))))))))..)))))))))..)))..))))))

Structure
ccca      --   cc         -g         uauuuaaaugucauccc      ug   aaac 
    augaga  gau  cugcccuca  ccguuuagc                 aucaga  guu    u
    ||||||  |||  |||||||||  |||||||||                 ||||||  |||    a
    uacucu  cUA  GAUGGGAGU  GGCAAAUCG                 uggucu  caa    u
----      gc   CU         AA         -----------------      ua   aucu 


Annotation confidence Not enough data
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Genome context
chr2: 12625026-12625142 [-]

Database links

Mature mtr-miR5294c

Accession MIMAT0021362
Description Medicago truncatula mtr-miR5294c mature miRNA
Sequence 85 - GCUAAACGGAAUGAGGGUAGUCAU - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010