miRBase entry: rmi-mir-5316a

Stem-loop rmi-mir-5316a


Accession
MI0018496
Description
Rhipicephalus microplus rmi-mir-5316a precursor miRNA
Gene family
MIPF0001364; mir-5316


Sequence

gauuuuguaccacuagcaggcuggcgaaaauguuccgguugaauugaauggcugauuugUCACCGGCGCUUUUUCGACGAGcuuuccgugguuucucgucaca
(((.....(((((....(((((.(((((((.((.(((((.((...((((.....)))).))))))).)).)))))).).)))))...))))).....)))...

Structure
---   uuugu     uagc     g -      u  u     u  auu    g 
   gau     accac    aggcu g cgaaaa gu ccggu ga   gaau g
   |||     |||||    ||||| | |||||| || ||||| ||   |||| c
   cug     uggug    uucGA C GCUUUU CG GGCCA CU   uuua u
aca   cucuu     -ccu     G A      U  C     -  --g    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5316a

Accession MIMAT0021387
Description Rhipicephalus microplus rmi-miR-5316a mature miRNA
Sequence 60 - UCACCGGCGCUUUUUCGACGAG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328