miRBase entry: rmi-mir-5335

Stem-loop rmi-mir-5335


Accession
MI0018517
Description
Rhipicephalus microplus rmi-mir-5335 precursor miRNA


Sequence

ccucugcguacaugguggcuguuucguuggguuuuugugcgcgagccucaaucagUUGCUGUGCGCGAUCCCGUCGGUCcguguucaaaaauguggcgagg
((((.((.(((((..((((((..(((.((((...((((((((.(((..(.....)..))))))))))).)))).)))..)).).)))...)))))))))))

Structure
    u  g     -gg   - -  uu   u    uuu        g   cu a 
ccuc gc uacau   ugg c ug  ucg uggg   uugugcgc agc  c a
|||| || |||||   ||| | ||  ||| ||||   |||||||| |||  | u
ggag cg gugua   acu g gc  GGC GCCC   AGCGCGUG UCG  g c
    -  -     aaa   u u  CU   U    --U        -   UU a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5335

Accession MIMAT0021408
Description Rhipicephalus microplus rmi-miR-5335 mature miRNA
Sequence 56 - UUGCUGUGCGCGAUCCCGUCGGUC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328