miRBase entry: gma-MIR5379

Stem-loop gma-MIR5379


Accession
MI0018638
Description
Glycine max gma-MIR5379 precursor miRNA
Gene family
MIPF0001334; MIR4997


Sequence

cacgucaucacagacaucauaaugaaugauuuucauguuuauauuuaaauuaguuguuauauguuugucauuugaauuugacacuuaauuuguucaaauuuauacuuacauacaacaaauuuaaacagagacAUGAAAAUCAUUCAUUAUGAUAUCcgugaugacgug
(((((((((((.((.(((((((((((((((((((((((((...((((((((.(((((...((((..((....(((((((((.((.......))))))))))).))..))))))))).))))))))...))))))))))))))))))))))))).)).)))))))))))

Structure
           a  c                         aua        a     uau    uu  cauu         c  uu 
cacgucaucac ga aucauaaugaaugauuuucauguuu   uuuaaauu guugu   augu  gu    ugaauuuga ac  a
||||||||||| || |||||||||||||||||||||||||   |||||||| |||||   ||||  ||    ||||||||| ||  a
gugcaguagug CU UAGUAUUACUUACUAAAAGUAcaga   aaauuuaa caaca   uaca  ca    auuuaaacu ug  u
           c  A                         gac        a     ---    uu  ---u         -  uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gma-miR5379

Accession MIMAT0021620
Description Glycine max gma-miR5379 mature miRNA
Sequence 133 - AUGAAAAUCAUUCAUUAUGAUAUC - 156
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307