miRBase entry: gma-MIR5380a

Stem-loop gma-MIR5380a


Accession
MI0018639
Description
Glycine max gma-MIR5380a precursor miRNA
Gene family
MIPF0001331; MIR5380


Sequence

guaacucuuuuagaguuacuucucauccucaccauucauuuuuuuaagaucuaaugguuaaaauuaguuacuuauuacaaccauuagauuuuaaGAAAAUGAAUGAUGAGGAUGGGGAguaacucuaaaaaaguuac
((((((.((((((((((((((((((((((((.(((((((((((((((((((((((((((..(((.........)))..))))))))))))))))))))))))))).)))))))))))))))))))))))).))))))

Structure
      c                        c                           aa   uag 
guaacu uuuuagaguuacuucucauccuca cauucauuuuuuuaagaucuaaugguu  aau   u
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||   u
cauuga aaaaucucaaugAGGGGUAGGAGU GUAAGUAAAAGaauuuuagauuaccaa  uua   a
      a                        A                           ca   uuc 


Annotation confidence Not enough data
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Genome context
chr11: 7797520-7797656 [+]

Database links

Mature gma-miR5380a

Accession MIMAT0021621
Description Glycine max gma-miR5380a mature miRNA
Sequence 95 - GAAAAUGAAUGAUGAGGAUGGGGA - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307