miRBase entry: gma-MIR172i

Stem-loop gma-MIR172i


Accession
MI0018670
Description
Glycine max gma-MIR172i precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
27 open access papers mention gma-MIR172i
(124 sentences)

Sequence

gcagguGCAGCAGCAUCAAGAUUCACAccgccuaauuugcuaggacuucaggacugcacacgcuuaauuauacauacauauauacauauauguuagcucuuuguggagugcggaauaaaguucuauuuuagaugugGGAAUCUUGAUGAUGCUGCAUcagc
((.(((((((((.(((((((((((.(((...((((.....((((((((.....((((((.(((............(((((((....))))))).........)))..))))))....))))))))..))))..))).))))))))))).))))))))).))

Structure
  a         G           A   cgc    uuugc        cagga      -a   uuaauuauacau       u 
gc gguGCAGCA CAUCAAGAUUC CAc   cuaa     uaggacuu     cugcac  cgc            acauaua a
|| ||||||||| ||||||||||| |||   ||||     ||||||||     ||||||  |||            |||||||  
cg cUACGUCGU GUAGUUCUAAG gug   gauu     aucuugaa     ggcgug  gug            uguauau c
  a         A           G   -ua    ---uu        -auaa      ag   ---uuucucgau       a 


Annotation confidence Not enough data
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Genome context
chr15: 2892841-2893001 [-]

Database links

Mature gma-miR172i-5p

Accession MIMAT0021659
Description Glycine max gma-miR172i-5p mature miRNA
Sequence 7 - GCAGCAGCAUCAAGAUUCACA - 27
Evidence experimental
Illumina [1]

Mature gma-miR172i-3p

Accession MIMAT0022996
Description Glycine max gma-miR172i-3p mature miRNA
Sequence 137 - GGAAUCUUGAUGAUGCUGCAU - 157
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553