miRBase entry: gma-MIR171l

Stem-loop gma-MIR171l


Accession
MI0018687
Description
Glycine max gma-MIR171l precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
15 open access papers mention gma-MIR171l
(36 sentences)

Sequence

gagaaagCGAUGUUGGUGAGGUUCAAUCcgaagacggauuuacauguagaagcaguaaaauacgaucucagauugagccgcgccaauaucacuuuauc
...((((.((((((((((.(((((((((.((.((((..(((((.(((....))))))))...)).)))).))))))))).)))))))))).))))...

Structure
gag    C          A         c  a  -  -ga     a   a 
   aaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuac ugu g
   |||| |||||||||| ||||||||| || || ||   ||||| |||  
   uuuc cuauaaccgc ccgaguuag cu cu gc   aaaug acg a
cua    a          g         a  -  a  aua     -   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 8830894-8830991 [-]

Database links

Mature gma-miR171l

Accession MIMAT0021678
Description Glycine max gma-miR171l mature miRNA
Sequence 8 - CGAUGUUGGUGAGGUUCAAUC - 28
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307