miRBase entry: sbi-MIR5385

Stem-loop sbi-MIR5385


Accession
MI0018692
Description
Sorghum bicolor sbi-MIR5385 precursor miRNA

Literature search
2 open access papers mention sbi-MIR5385
(6 sentences)

Sequence

ggaguuuugcacgccgccgcuucucACCACCAACCCCACCGCUUCUCcgcgccgaggggcgagaagcggugguguugguggugagaagcagcggcguggcagauuugcag
(.((.((((((((((((.((((((((((((((((.((((((((((((.((.(....).)))))))))))))).)))))))))))))))).))))))).))))).)).)..

Structure
-- g  u     -       c                C            c  g c 
  g ag uuugc acgccgc gcuucucACCACCAAC CCACCGCUUCUC gc c g
  | || ||||| ||||||| |||||||||||||||| |||||||||||| || |  
  c uu agacg ugcggcg cgaagaguggugguug gguggcgaagag cg g a
ga g  u     g       a                u            -  g g 


Annotation confidence Not enough data
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Genome context
chr6: 55351481-55351590 [+]

Database links

Mature sbi-miR5385

Accession MIMAT0021683
Description Sorghum bicolor sbi-miR5385 mature miRNA
Sequence 26 - ACCACCAACCCCACCGCUUCUC - 47
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21740560
    Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
    Calviño M, Bruggmann R, Messing J
    BMC Genomics (2011) 12:356