Stem-loop sbi-MIR5386

Accession

MI0018693

Description

Sorghum bicolor sbi-MIR5386 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5386
(4 sentences)

Sequence

cgcacuguggguaugCGUCGCUGUCGCGCGCGCUGcaggccauguuccauggcuuccugucaggucagggcagagcacgcaccccucgucuugcuuugggcaugucucca
.(((.((.(((..(((((.(((.(.((.(...((((((((((((...))))))...))).)))....).))).)))))))).))).))...)))..((((......))))

Structure

---------------c   --c  u   ua     C   G C  G -GCG   -   ---      u 
                gca   ug ggg  ugCGU GCU U GC C    CUG cag   gccaug  
                |||   || |||  ||||| ||| | || |    ||| |||   |||||| u
                cgu   gc ccc  acgca cga a cg g    gac guc   cgguac  
accucuguacggguuu   ucu  u   -c     -   g -  g acug   u   cuu      c 

Annotation confidence Not enough data

Genome context

chr7: 854632-854741 [+]

Mature sbi-miR5386

• Accession: MIMAT0021684
• Description: Sorghum bicolor sbi-miR5386 mature miRNA
• Sequence: 16 - CGUCGCUGUCGCGCGCGCUG - 35
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356