miRBase entry: aca-let-7b

Stem-loop aca-let-7b


Accession
MI0018702
Description
Anolis carolinensis aca-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention aca-let-7b
(2 sentences)

Sequence

uagcucuggcaaggUGAGGUAGUAGGUUGUGUGGUuucaggguagucauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCuuga
.........(((((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))))).

Structure
uagcucugg     U                     ---------uca      u 
         caagg GAGGUAGUAGGUUGUGUGGUu            ggguag c
         ||||| |||||||||||||||||||||            |||||| a
         guuCC UUCCGUCAUCCAACAUAUCaa            cccguu u
--------a     -                     uagaggacuaac      u 


Annotation confidence Not enough data
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Genome context
chr5: 83532327-83532421 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7b-5p

Accession MIMAT0021694
Description Anolis carolinensis aca-let-7b-5p mature miRNA
Sequence 15 - UGAGGUAGUAGGUUGUGUGGU - 35
Evidence experimental
Illumina [1]

Mature aca-let-7b-3p

Accession MIMAT0021695
Description Anolis carolinensis aca-let-7b-3p mature miRNA
Sequence 71 - CUAUACAACCUACUGCCUUCC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107