miRBase entry: aca-let-7d

Stem-loop aca-let-7d


Accession
MI0018705
Description
Anolis carolinensis aca-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention aca-let-7d
(1 sentences)

Sequence

gugggcuccuaggaAGAGGUAGUAGGUUGCAUAGUuuuagggcagugguuuugcccaaaaggaguuaaCUAUACAACCUGCUGCCUUUCuuagggcu
...(((.(((((((.((((((((((((((.((((((((.((((((.....)))))).)).......)))))).))))))))))))))))))))))))

Structure
gug   u       A              C      -------  a      u 
   ggc ccuagga GAGGUAGUAGGUUG AUAGUu       uu gggcag g
   ||| ||||||| |||||||||||||| ||||||       || |||||| g
   ucg ggauuCU UUCCGUCGUCCAAC UAUCaa       aa cccguu u
---   -       -              A      uugagga  a      u 


Annotation confidence Not enough data
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Genome context
GL343225.1: 747541-747637 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7d-5p

Accession MIMAT0021699
Description Anolis carolinensis aca-let-7d-5p mature miRNA
Sequence 15 - AGAGGUAGUAGGUUGCAUAGU - 35
Evidence experimental
Illumina [1]

Mature aca-let-7d-3p

Accession MIMAT0021700
Description Anolis carolinensis aca-let-7d-3p mature miRNA
Sequence 69 - CUAUACAACCUGCUGCCUUUC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107