miRBase entry: aca-let-7f-1

Stem-loop aca-let-7f-1


Accession
MI0018707
Description
Anolis carolinensis aca-let-7f-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention aca-let-7f-1
(1 sentences)

Sequence

uccugggaUGAGGUAGUAGAUUGUAUAGUUuuagggucauacccggucuuggagauaaCUAUACAAUCUACUGUCUUUccuaug
...(((((.(((((((((((((((((((((...((((...)))).((((...))))))))))))))))))))))))))))))..

Structure
ucc     U                     ---------uua    c 
   uggga GAGGUAGUAGAUUGUAUAGUU            gggu  
   ||||| |||||||||||||||||||||            |||| a
   auccU UUCUGUCAUCUAACAUAUCaa            ccca  
-gu     -                     uagagguucugg    u 


Annotation confidence Not enough data
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Genome context
chr1: 205026170-205026253 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-let-7f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7f-5p

Accession MIMAT0021703
Description Anolis carolinensis aca-let-7f-5p mature miRNA
Sequence 9 - UGAGGUAGUAGAUUGUAUAGUU - 30
Evidence experimental
Illumina [1]

Mature aca-let-7f-1-3p

Accession MIMAT0021704
Description Anolis carolinensis aca-let-7f-1-3p mature miRNA
Sequence 59 - CUAUACAAUCUACUGUCUUU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107