miRBase entry: aca-let-7f-2

Stem-loop aca-let-7f-2


Accession
MI0018708
Description
Anolis carolinensis aca-let-7f-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention aca-let-7f-2
(1 sentences)

Sequence

uucucuuuaucagguUGAGGUAGUAGAUUGUAUAGUUguagggcaguuauuuugcccucuucaggagauaaCUAUACAAUCUAUUGCCUUCCcugaggaguaacauu
..((((...(((((..((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))))))).......

Structure
-----uu    uua     uU                       ---------       u 
       cucu   ucagg  GAGGUAGUAGAUUGUAUAGUUgu         agggcag u
       ||||   |||||  |||||||||||||||||||||||         ||||||| a
       gagg   agucC  UUCCGUUAUCUAACAUAUCaaua         ucccguu u
uuacaau    ---     -C                       gaggacuuc       u 


Annotation confidence Not enough data
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Genome context
GL343225.1: 748285-748391 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-let-7f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7f-5p

Accession MIMAT0021703
Description Anolis carolinensis aca-let-7f-5p mature miRNA
Sequence 16 - UGAGGUAGUAGAUUGUAUAGUU - 37
Evidence experimental
Illumina [1]

Mature aca-let-7f-2-3p

Accession MIMAT0021705
Description Anolis carolinensis aca-let-7f-2-3p mature miRNA
Sequence 72 - CUAUACAAUCUAUUGCCUUCC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107