miRBase entry: aca-mir-133a-2

Stem-loop aca-mir-133a-2

Accession

MI0018740

Description

Anolis carolinensis aca-mir-133a-2 precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

2 open access papers mention aca-mir-133a-2
(8 sentences)

Sequence

cuuaaugucgaugcuuugcuaaagcugguaaaauggaaccaaaucaccuguuaaauggaUUUGGUCCCCUUCAACCAGCUGuagcuauguauugauc
......((((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))))).

Structure

cuuaau        uuu    a       aa  u  a        accug 
      gucgaugc   gcua agcuggu  aa gg accaaauc     u
      ||||||||   |||| |||||||  || || ||||||||      
      uaguuaug   cgau UCGACCA  UU CC UGGUUUag     u
-----c        uau    G       AC  C  C        guaaa

Annotation confidence Not enough data

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Genome context

chr4: 38863208-38863304 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-133a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-133a

Accession	MIMAT0021749
Description	Anolis carolinensis aca-miR-133a mature miRNA
Sequence	60 - UUUGGUCCCCUUCAACCAGCUG - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107