Stem-loop aca-mir-138-1

Accession

MI0018746

Description

Anolis carolinensis aca-mir-138-1 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

agucacgguauuguugcugcAGCUGGUGUUGUGAAUCAGGCCgacaaaaagcgcaucuuacuauccgGCUAUUUCACUACACCAGGGUugcaucauacc
......(((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).))))))

Structure

agucac     u u   u  AG       U     UCA     acaaaaagcg 
      gguau g ugc gc  CUGGUGU GUGAA   GGCCg          c
      ||||| | ||| ||  ||||||| |||||   |||||           
      ccaua c acg UG  GACCACA CACUU   UCGgc          a
------     - u   u  -G       U     -UA     cuaucauucu 

Annotation confidence Not enough data

Genome context

GL343675.1: 287375-287473 [+]

Mature aca-miR-138-5p

• Accession: MIMAT0021757
• Description: Anolis carolinensis aca-miR-138-5p mature miRNA
• Sequence: 21 - AGCUGGUGUUGUGAAUCAGGCC - 42
• Evidence: experimental ; Illumina [1]

Mature aca-miR-138-1-3p

• Accession: MIMAT0021758
• Description: Anolis carolinensis aca-miR-138-1-3p mature miRNA
• Sequence: 68 - GCUAUUUCACUACACCAGGGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107