miRBase entry: aca-mir-16a

Stem-loop aca-mir-16a


Accession
MI0018770
Description
Anolis carolinensis aca-mir-16a precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

uacuuguuccgcccUAGCAGCACGUAAAUAUUGGuguaguaaagauaaucuuaaccCCAAUAUUGUUGUGCUGCUUAagcguggcagggauu
..((((((.(((...(((((((((..((((((((.(..((.((((...)))).)))))))))))..)))))))))...))).))))))....

Structure
--ua      c   ccU         UA        u ua  a    u 
    cuuguu cgc   AGCAGCACG  AAUAUUGG g  gu aaga  
    |||||| |||   |||||||||  |||||||| |  || |||| a
    ggacgg gcg   UCGUCGUGU  UUAUAACC c  ca uucu  
uuag      u   aAU         UG        - --  a    a 


Annotation confidence Not enough data
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Genome context
chr3: 13038961-13039052 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-16a-5p

Accession MIMAT0021799
Description Anolis carolinensis aca-miR-16a-5p mature miRNA
Sequence 15 - UAGCAGCACGUAAAUAUUGG - 34
Evidence experimental
Illumina [1]

Mature aca-miR-16a-3p

Accession MIMAT0021800
Description Anolis carolinensis aca-miR-16a-3p mature miRNA
Sequence 57 - CCAAUAUUGUUGUGCUGCUUA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107