miRBase entry: aca-mir-1788

Stem-loop aca-mir-1788


Accession
MI0018773
Description
Anolis carolinensis aca-mir-1788 precursor miRNA
Gene family
MIPF0000792; mir-1788


Sequence

uguaaccucccugugcugGGCUUGUUUUCAGUUGCCUGCGgcugauuaauagggacuCAGGCAGCUAAAGCAAGUCUGauacaugaaaggagaacc
......(((((((((.((((((((((((.(((((((((.(.((........))..).))))))))))))))))))))).)))).)...))))....

Structure
uguaac    --- -    c            C         C -g  gau 
      cucc   c ugug ugGGCUUGUUUU AGUUGCCUG G  cu   u
      ||||   | |||| |||||||||||| ||||||||| |  ||    
      gagg   g acau GUCUGAACGAAA UCGACGGAC c  gg   a
--ccaa    aaa u    a            -         u ag  aua 


Annotation confidence Not enough data
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Genome context
chr1: 87812117-87812212 [-]

Database links

Mature aca-miR-1788-5p

Accession MIMAT0021805
Description Anolis carolinensis aca-miR-1788-5p mature miRNA
Sequence 19 - GGCUUGUUUUCAGUUGCCUGCG - 40
Evidence experimental
Illumina [1]

Mature aca-miR-1788-3p

Accession MIMAT0021806
Description Anolis carolinensis aca-miR-1788-3p mature miRNA
Sequence 58 - CAGGCAGCUAAAGCAAGUCUG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107