miRBase entry: aca-mir-181a-2

Stem-loop aca-mir-181a-2


Accession
MI0018776
Description
Anolis carolinensis aca-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
1 open access papers mention aca-mir-181a-2
(1 sentences)

Sequence

aggauagcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaaucgagagcaaaccaucgaccguugacuguaccuugagguuuaucacugac
(((((((((((((.(.(((.((((((..(((((((.(((((..........)))))))))))))))))).))).).)))))).))))).))...

Structure
---  -     -      u A   U      CU       A     gaau 
   ag gauag cuucag g ACA UCAACG  GUCGGUG GUuug    c
   || ||||| |||||| | ||| ||||||  ||||||| |||||     
   uc cuauu ggaguu c ugu aguugc  cagcuac caaac    g
cag  a     u      c a   c      --       -     gaga 


Annotation confidence Not enough data
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Genome context
GL343937.1: 21112-21205 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-181a

Accession MIMAT0021809
Description Anolis carolinensis aca-miR-181a mature miRNA
Sequence 16 - AACAUUCAACGCUGUCGGUGAGU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107