Stem-loop aca-mir-18b

Accession

MI0018784

Description

Anolis carolinensis aca-mir-18b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

gaaacagcuuccugugcUAAGGUGCAUCUAGUGCAGUUAGugaaguagcuuagaaucUACUGCCCUGAAUGCUCCUUCUGgcauaggaggcc
......((((((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..))))))))))))).

Structure

gaaaca             --   U    C   U     U  ugaagua 
      gcuuccugugcUA  AGG GCAU UAG GCAGU AG       g
      |||||||||||||  ||| |||| ||| ||||| ||        
      cggaggauacgGU  UCC CGUA GUC CGUCA Uc       c
-----c             CU   U    A   C     -  uaagauu 

Annotation confidence Not enough data

Genome context

GL344214.1: 22462-22553 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-18b

Mature aca-miR-18b-5p

• Accession: MIMAT0021819
• Description: Anolis carolinensis aca-miR-18b-5p mature miRNA
• Sequence: 18 - UAAGGUGCAUCUAGUGCAGUUAG - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-18b-3p

• Accession: MIMAT0021820
• Description: Anolis carolinensis aca-miR-18b-3p mature miRNA
• Sequence: 58 - UACUGCCCUGAAUGCUCCUUCUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107